SV and fusion transcript

Tabular data format for SV and fusion events

First line must be the header line, with following columns.

• gene_a

  • gene on 5’ end of a fusion. Do not apply value for intergenic break-end.

• isoform_a

  • The RefSeq/Ensembl accession of gene_a. Leave blank for intergenic break-end.

• chr_a

  • Chromosome name of gene_a. In case of intergenic translocation, use the 5’ end of the break point. Use name “chr10” but not “10”.

• position_a

  • Chromosomal position of the 5’ end break point, 0-based.

• strand_a

  • • or -

• gene_b

  • Gene on 3’ end of a fusion. In case of intergenic translocation, leave unspecified.

• isoform_b

  • The RefSeq/Ensembl accession of gene_b. Leave blank for intergenic break-end.

• chr_b

  • Chromosome name of gene_b. In case of intergenic translocation, use the 3’ end of the break point.

• position_b

  • Chromosomal position of the 3’ end break point, 0-based.

• strand_b

  • • or -

Optional columns:

• Patient
• Sample
• Sampletype

Order of column doesn’t matter.

Lines starting with ”#” will be ignored.