Internal tandem duplications

ITD: internal tandem duplication

First line must be the header line, with following columns. Order of columns does not matter.

• gene

  • Gene symbol.

• isoform

  • RefSeq/Ensembl accession of the isoform.

• rnaPosition

  • optional
  • RNA nucleotide position of the 5’ end of the duplicated region on the gene transcript, relative to transcription start site. 1-based.

• rnaDuplength

  • RNA nucleotide length of the duplicated region, required if rnaPosition is used.

• chr

  • Chromosome name, optional

• chr_start

  • Start genomic position, required if “chr” is used.

• Chr_stop

  • Stop genomic position, required if “chr” is used.

Other optional columns:

• Patient
• Sample
• Sampletype
• disease

Data lines starting with ”#” will be ignored.