Lollipop

Last updated: 2 years ago (view history), Time to read: 1 mins

Description

These code block examples can be used to generate a lollipop figure as seen in VisCom.

Use: Used for displaying the frequency and type of mutation for a given gene on the protein structure in the context of functional domains. ProteinPaint Google Docs

warning

This is a track and will be uplifted into the new VisEditor easy view soon.

Example for Pediatric

Be sure to update lines 1 and 2

{
           "genome": "hg19",
           "gene": "jak2",
           "dataset": "Pediatric"
}

Example for COSMIC

Be sure to update lines 1 and 2

{
           "genome": "hg19",
           "gene": "jak2",
           "dataset": "COSMIC"
}

Example for ClinVar

Be sure to update lines 1 and 2

{
           "genome": "hg19",
           "gene": "jak2",
           "dataset": "ClinVar"
}

Example for CIViC

Be sure to update line 2. CIViC is only available in the hg38 ref genome

{
           "genome": "hg38",
           "gene": "jak2",
           "dataset": "CIViC"
}